By the end of Season 1, Lourdes and Jared split up because she learns that he had an affair with Michaela. Zeke and Michaela marry in the penultimate episode of Season 2, just before Zeke's death date arrives. He manages to avoid death by following a calling, and he's still married to Michaela throughout Season 3.
Does Jared leave his wife on Manifest?
This reunion was ultimately a mistake, as they decided not to take the relationship further. The night did, however, cause Jared and his wife to split up. Jared and Michaela remained close coworkers, working together to help the passengers of Flight 828.
Who does Jared end up with in Manifest?
Jared Vasquez begins his story on Manifest by asking his then-girlfriend Michaela Stone to marry him but she needs time to think and boards Flight 828 before giving him an answer. When Michaela returns, it's five years later and Jared has moved on, marrying Michaela's once best friend, Lourdes, in the years since.